Browse of TCMCG006C23493 protein

CDS

Accession Number	TCMCG006C23493
gbkey	CDS
Protein Id	XP_022553147.1
Location	join(837925..837970,838040..838208,838288..838498,838596..838652,838766..838906,839009..839089,839176..839263,839356..839693,839778..840047,840157..840320,840406..840478,840568..840681,840801..840881,840948..841091,841182..841373)
Gene	LOC106352717
GeneID	106352717
Organism	Brassica napus

Protein

Length	722aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA293435
db_source	XM_022697426.1
Definition	DNA repair helicase XPB1-like [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category	KL
Description	a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies
KEGG_TC	-
KEGG_Module	M00290        [VIEW IN KEGG]
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko00002        [VIEW IN KEGG] ko01000        [VIEW IN KEGG] ko03021        [VIEW IN KEGG] ko03400        [VIEW IN KEGG]
KEGG_ko	ko:K10843        [VIEW IN KEGG]
EC	3.6.4.12        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway	ko03022        [VIEW IN KEGG] ko03420        [VIEW IN KEGG] map03022        [VIEW IN KEGG] map03420        [VIEW IN KEGG]
GOs	GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005737        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0009314        [VIEW IN EMBL-EBI] GO:0009411        [VIEW IN EMBL-EBI] GO:0009416        [VIEW IN EMBL-EBI] GO:0009628        [VIEW IN EMBL-EBI] GO:0010224        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0050896        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGAAGAACATCCAAAACGAAGAATACTACATGGGTGATGATGATGGTGAAGGAGAGAAGATGAACACGGATTTTAGCAAATTGGAGTTGAAACCAGATCATGTGAACAGACCTTTGTGGGCTTGTGCTGATGGCAGGATTTTCCTGGAAACTTACTCTCCTCTCTACAAACAAGCTTATGACTTTCTTATCGCCATTGCTGAACCCGTTTGCAGGCACGAGTATAATTTAACTCCCCACTCTCTGTACGCTGCTGTTTCCGTTGGTCTTGAGACAGAGACTATCATCTCTGTTTTGAATAAGCTTTCTAAGACTAAGCTACCCAATGATATGATTGATTTCATCATTGCTTCTACTGCCAACTACGGCAAAGTCAAGCTGGTTTTGAAAAAGAATCGCTATTTTATTGAATCCCCATTCCCTGAGGTGCTGAAAAAGCTTGGCAACGATGGTCTTATAAGCAAAGCTAGATTATATTCTGATCCATATGGTGGTGATGGATTCACCATCGGAAAAACAAGCGGTGAACTTGAAGCAGGACCTGGGGAGCTGTTGAATGCAGCAGAACTGGCAGCAGCTACACAAGAGAAAGAAACTCACTCATTTGAGATAGACCCTGCCCAGGTGGAGATTGTGAAGCACCGTTGCTTGCCAAGCGAACTGAATTACCCTATGCTAGAGGAATACGACTTCACGAACGACAACGTGAATCCTGATCTTGACATGGAACTGAAGCCCCATGCACAACCGAGGCCATACCAGGAAAAAAGTCTGAGCAAAATGTTTGGGAACGGAAGGGCAAGATCTGGGATTATAGTGTTGCCTTGTGGTGCTGGTAAATCTCTAGTTGGTGTTTCTGCAGCGGCTCGTATAAAAAAGAGTTGTCTATGTTTGGCGACGAATGCTGTCTCGGTGGATCAGTGGGCCTTCCAGTTCAAGTTGTGGTCTACTCTAAGAGATGACCAAATATGCCGTTTCACTTCCGATAGTAAAGAACGGTTCCGTGGAAATGCTGGTGTTGTTGTGACAACCTATAATATGGTGGCCTTTGGTGGTAAACGGTCTGAGGAGTCAGAGAAGATCATTGAAGAAATGAGAAACAGGGAGTGGGGTTTGCTGCTCATGGACGAGGTGCATGTGGTTCCGGCCCAAATGTTTAGGAAAGTCATCAGCATCACAAAATCTCACTGCAAGCTAGGACTTACAGCAACCCTTGTGAGAGAAGACGAAAAGATTACAGATTTGAACTTCCTCATTGGCCCGAAGCTATATGAAGCCAATTGGCTAGATTTAGTTAAAGGAGGCTTCATTGCAAATGTTCAGTGTGCTGAAGTATGGTGTCCTATGACCAAAGAGTTCTTTGCAGAATATCTCAAGAAAGAGAACTCCAAGAAAAAACAGGCTCTTTATGTAATGAACCCTAACAAGTTCAGAGCCTGTGAGTTTCTTATTCGTTTCCATGAACAACAACGTGGGGATAAAATCATTGTCTTCGCAGACAATCTTTTTGCACTTACTGAATATGCAATGAAACTTCGCAAACCGATGATTTATGGTGCAACCAGCCATATCGAACGAACCAAAATTCTAGAGGCGTTTAAAACCAGTAAAGACGTGAACACAGTCTTCTTGTCAAAGGTTGGTGATAACTCCATAGATATCCCTGAAGCTAATGTGATTATCCAGATTTCGTCACATGCTGGTTCTAGACGTCAAGAGGCTCAGCGTTTGGGTCGTATTCTTAGGGCCAAGGGTAAAACTGAAGATAGAATGGCTGGTGGAAAAGAAGAGTACAATGCATTCTTCTACTCACTTGTTTCTACAGATACGCAGGAAATGTATTTTTCAACGAAAAGACAGCAGTTCTTGATCGACCAAGGTTATAGCTTTAAAGTTATAACAAGTCTTCCACCACCTGATGCTGGTTCAAGCTTAAGCTACAACAGTCAAGAAGAACAGTTATCCCTTCTCGCAAAGGTGTTGAACGCTGGAGACGATTTGGTTGGCTTAGAGCAACTGGAAGAAGACATAGACGGAAAGGCCCTGCAAGCTACGAGACGAAGCAGGGGAGCGATGAGTGTAATGTCAGGTGCAAAAGGATTTGTGTATCAGGAATTCAAGAAACCTAAAGACCCTACAAAACGACACCAGCTCTTCAAGACACGTTAA

Protein:   MKNIQNEEYYMGDDDGEGEKMNTDFSKLELKPDHVNRPLWACADGRIFLETYSPLYKQAYDFLIAIAEPVCRHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPNDMIDFIIASTANYGKVKLVLKKNRYFIESPFPEVLKKLGNDGLISKARLYSDPYGGDGFTIGKTSGELEAGPGELLNAAELAAATQEKETHSFEIDPAQVEIVKHRCLPSELNYPMLEEYDFTNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTLRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAQMFRKVISITKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKTEDRMAGGKEEYNAFFYSLVSTDTQEMYFSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYNSQEEQLSLLAKVLNAGDDLVGLEQLEEDIDGKALQATRRSRGAMSVMSGAKGFVYQEFKKPKDPTKRHQLFKTR